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ASRB Agricultural Research Service Categorical Data Analysis & Generalized Linear Models: practice questions

ASRB Agricultural Research Service (ARS) - Agricultural Statistics scientist · India · Agricultural Scientists Recruitment Board (ICAR)

Original practice questions written to the published syllabus · not past papers
10worked here, free
44written to this exam in this subject
11syllabus units

What this subject covers

Models for counts, proportions and categories: contingency tables, the exponential-family GLM with its link functions, logistic and Poisson regression, log-linear models, overdispersion, ordinal outcomes and generalised linear mixed models, applied to germination, mortality, pest counts and adoption data.

In the exams: AICE-JRF Ag Stat Unit 2 'contingency tables, log linear models' (heavy); GATE DA logistic regression (present); light in UPSC ISS

Where the 44 questions fall

How our questions for ASRB Agricultural Research Service spread across the units of Categorical Data Analysis & Generalized Linear Models. Difficulty: 7 easy, 30 medium, 7 hard.

Logistic regression for binary and binomial data6
Zero-inflated and hurdle models6
Poisson regression for counts5
Ordinal and multinomial logistic models5
Generalized linear mixed models5
Overdispersion: quasi-likelihood and negative binomial models4
Contingency tables: association, odds ratios and tests3
Exponential family and the generalized linear model3
Link functions, deviance and iteratively reweighted least squares3
Model checking: residuals and goodness of fit3
Log-linear models for multi-way tables1

10 practice questions, worked

Choose an answer, then open the working. Each explanation says why the right answer is right and why the others are not.

1 · Link functions, deviance and iteratively reweighted least squares · hard

A germination model has residual deviance 31.2 on 16 df, and dropping treatments raises it by 21.6 on 3 df. Taking the dispersion as φ̂ = 31.2/16, what is the quasi-likelihood F statistic?

  1. 7.20 on (3, 16) df
  2. 11.08 on (3, 16) df
  3. 3.69 on (3, 16) df
  4. 21.60 on (3, 16) df
Answer and working

C. 3.69 on (3, 16) df

φ̂ = 1.95; F = (21.6/3)/1.95 = 3.69. 7.20 ignores overdispersion; 11.08 forgets to divide by the 3 df.

Further reading: McCullagh and Nelder, Generalized Linear Models; Agresti, Categorical Data Analysis; Dobson and Barnett, An Introduction to Generalized Linear Models

2 · Link functions, deviance and iteratively reweighted least squares · medium

A logistic regression fails to converge, with one coefficient and its standard error growing very large. What is the likely cause and remedy?

  1. Too few iterations: increase the iteration limit
  2. Overdispersion: use a quasi-binomial model
  3. Separation; use Firth's penalised likelihood
  4. A wrong link: switch from logit to probit
Answer and working

C. Separation; use Firth's penalised likelihood

Under complete or quasi-complete separation the MLE is infinite, so estimates diverge; Firth's bias-reduced likelihood or exact methods give finite estimates. More iterations or another link do not help.

Further reading: McCullagh and Nelder, Generalized Linear Models; Agresti, Categorical Data Analysis; Dobson and Barnett, An Introduction to Generalized Linear Models

3 · Poisson regression for counts · medium

Trap A catches 42 thrips in 6 days; trap B catches 50 in 10 days. With log(days) as offset, what is the estimated log rate ratio A versus B?

  1. 2.000
  2. 0.336
  3. −0.174
  4. −0.511
Answer and working

B. 0.336

Rates are 7.0 and 5.0 per day, ratio 1.4, log 1.4 = 0.336. log(42/50) = −0.174 ignores exposure and wrongly favours trap B.

Further reading: McCullagh and Nelder, Generalized Linear Models; Agresti, Categorical Data Analysis; Dobson and Barnett, An Introduction to Generalized Linear Models

4 · Poisson regression for counts · medium

Lesion counts per leaf are mostly 0 to 3. Why is a Poisson (or negative binomial) GLM better than ANOVA on log(count + 1)?

  1. It needs no arbitrary added constant
  2. It needs no assumption about the counts' distribution
  3. It always gives a higher R²
  4. It removes the need to consider overdispersion
Answer and working

A. It needs no arbitrary added constant

With small counts, log(y + 1) depends on the arbitrary constant and does not stabilise variance well; the count GLM uses the right distribution and link. Overdispersion still needs checking.

Further reading: McCullagh and Nelder, Generalized Linear Models; Agresti, Categorical Data Analysis; Dobson and Barnett, An Introduction to Generalized Linear Models

5 · Overdispersion: quasi-likelihood and negative binomial models · hard

How do the variance functions of quasi-Poisson and NB2 negative binomial models differ?

  1. Quasi-Poisson is quadratic; NB2 is linear
  2. Both are quadratic in μ
  3. Both are linear in μ
  4. Linear in μ versus quadratic in μ
Answer and working

D. Linear in μ versus quadratic in μ

The shapes differ, so the models weight large counts differently; a plot of squared residuals against fitted means helps choose.

Further reading: McCullagh and Nelder, Generalized Linear Models; Agresti, Categorical Data Analysis; Dobson and Barnett, An Introduction to Generalized Linear Models

6 · Zero-inflated and hurdle models · easy

In a hurdle model for pest counts, where do zeros come from?

  1. From neither; zeros are excluded
  2. Only from the count part
  3. Only from the binary part
  4. From both the binary and count parts
Answer and working

C. Only from the binary part

The count part is zero-truncated, so every zero comes from the binary zero-versus-positive model. In zero-inflated models zeros come from both sources.

Further reading: McCullagh and Nelder, Generalized Linear Models; Agresti, Categorical Data Analysis; Dobson and Barnett, An Introduction to Generalized Linear Models

7 · Zero-inflated and hurdle models · medium

Many fields have no pest because it has not yet arrived, while infested fields have Poisson-like counts that can also be zero. Which model matches this story?

  1. A proportional-odds model
  2. A hurdle model
  3. A quasi-Poisson model
  4. Zero-inflated model
Answer and working

D. Zero-inflated model

Two sources of zeros, structural (pest absent) and sampling (present but none caught), is the zero-inflated story. A hurdle model assumes all zeros come from one binary process.

Further reading: McCullagh and Nelder, Generalized Linear Models; Agresti, Categorical Data Analysis; Dobson and Barnett, An Introduction to Generalized Linear Models

8 · Zero-inflated and hurdle models · hard

In a zero-inflated negative binomial model, which part's predictors explain the probability of a structural zero?

  1. The log-linear model for the count mean
  2. The offset term
  3. The aggregation parameter k
  4. A logistic model for π
Answer and working

D. A logistic model for π

ZINB has two linear predictors: logit π for structural zeros and log μ for the counts; the same or different covariates can enter each.

Further reading: McCullagh and Nelder, Generalized Linear Models; Agresti, Categorical Data Analysis; Dobson and Barnett, An Introduction to Generalized Linear Models

9 · Generalized linear mixed models · medium

How can an observation-level random effect help in a Poisson GLMM?

  1. It absorbs overdispersion
  2. It removes the need for an offset
  3. It ensures every fitted count is an integer
  4. It converts counts to proportions
Answer and working

A. It absorbs overdispersion

A normal random effect for each observation makes the counts a Poisson-lognormal mixture, with variance exceeding the mean.

Further reading: McCullagh and Nelder, Generalized Linear Models; Agresti, Categorical Data Analysis; Dobson and Barnett, An Introduction to Generalized Linear Models

10 · Generalized linear mixed models · medium

A binomial GLMM reports a block variance estimate of exactly zero. How should this be treated?

  1. Hidden by dropping the blocks from the report
  2. A singular fit, reported as such
  3. Treated as proof that blocks were identical
  4. Fixed by adding a constant to the variance
Answer and working

B. A singular fit, reported as such

Boundary estimates are common with few levels; they mean the data cannot distinguish block variation from zero, not that it is absent.

Further reading: McCullagh and Nelder, Generalized Linear Models; Agresti, Categorical Data Analysis; Dobson and Barnett, An Introduction to Generalized Linear Models

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Categorical Data Analysis & Generalized Linear ModelsThe full study manual, free ASRB Agricultural Research ServiceFormat, sections and how it has changed

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