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ICAR AICE-JRF/SRF Exploratory Data Analysis & Statistical Graphics: practice questions

ICAR AICE-JRF/SRF - Agricultural Statistics, Computer Application, Bioinformatics (PhD admission and fellowship) · India · National Testing Agency for ICAR

Original practice questions written to the published syllabus · not past papers
10worked here, free
25written to this exam in this subject
10syllabus units

What this subject covers

Looking at data before modelling it: summaries, robust statistics, graphs that show distributions and relationships honestly, outlier detection, and the tidy-data and reporting habits that make an analysis checkable. Deliberately practical and software-based.

In the exams: Not an explicit unit in the catalogued exams; programme course and the daily practice of every role in the ladder. GATE DA data handling (present)

Where the 25 questions fall

How our questions for ICAR AICE-JRF/SRF spread across the units of Exploratory Data Analysis & Statistical Graphics. Difficulty: 3 easy, 17 medium, 5 hard.

Graphics for designed experiments: interaction plots and residual plots7
Transformations to symmetry and constant variance4
Tables for reports and publications4
Types of data and measurement scales2
Tidy data: variables, observations and tables2
Scatterplots, smoothing (LOESS) and scatterplot matrices2
Five-number summaries, box plots and robust statistics (median, MAD, trimmed means)1
Histograms, density estimates and quantile-quantile plots1
Outliers and influential observations1
Graphical perception and honest chart design1

10 practice questions, worked

Choose an answer, then open the working. Each explanation says why the right answer is right and why the others are not.

1 · Types of data and measurement scales · medium

Percentage germination is computed for seed lots tested with 25 seeds in some dishes and 400 in others. What should EDA note about this derived variable?

  1. Percentages from 25 seeds are far less precise than from 400 seeds
  2. Lots tested with 25 seeds should simply be rescaled to 400 seeds
  3. Lots tested with 25 seeds should simply be rescaled upward to the 400-seed basis first
  4. The percentages should be averaged as ratios using the harmonic mean of the lot sizes
Answer and working

A. Percentages from 25 seeds are far less precise than from 400 seeds

The SE of a proportion is √(p(1 − p)/n), so 25-seed tests are four times less precise in SE than 400-seed tests. Keeping the counts and denominators allows a binomial analysis that weights correctly.

Further reading: Tukey, Exploratory Data Analysis; Cleveland, Visualizing Data; Wickham, Tidy Data; Tufte, The Visual Display of Quantitative Information

2 · Tidy data: variables, observations and tables · medium

Farm size and district are typed on every plot row of a 3,000-plot on-farm trial file. Why is this considered untidy?

  1. Two unit types share one table, so a farm's correction must be repeated on many rows
  2. District cannot be stored together with numerical variables
  3. District is a text variable and cannot be stored together with numerical variables
  4. Farm size must always be recorded in a separate unit of measure from plot yields
Answer and working

A. Two unit types share one table, so a farm's correction must be repeated on many rows

Farm-level variables belong in a farm table keyed by farm identifier. Repeating them invites inconsistent values when one copy is corrected and others are not.

Further reading: Tukey, Exploratory Data Analysis; Cleveland, Visualizing Data; Wickham, Tidy Data; Tufte, The Visual Display of Quantitative Information

3 · Scatterplots, smoothing (LOESS) and scatterplot matrices · medium

A scatterplot of farm size against yield is crowded near small farms with a few very large farms stretching the axis. Which change is most useful?

  1. Use a pie chart of farm size classes
  2. Plot farm size on a logarithmic scale
  3. Delete the farms above the 90th percentile
  4. Swap the axes so farm size is vertical
Answer and working

B. Plot farm size on a logarithmic scale

Positive, multiplicative variables such as farm size are spread evenly by a log scale, which also often linearises the relation. Deleting large farms discards real data.

Further reading: Tukey, Exploratory Data Analysis; Cleveland, Visualizing Data; Wickham, Tidy Data; Tufte, The Visual Display of Quantitative Information

4 · Graphics for designed experiments: interaction plots and residual plots · easy

In an interaction plot of yield against nitrogen dose with one line per variety, the lines are nearly parallel. What does this suggest?

  1. That nitrogen has no effect on yield
  2. That nitrogen has no effect on yield at any of the doses tested
  3. That the varieties do not differ from one another in mean yield
  4. Little or no interaction between nitrogen and variety
Answer and working

D. Little or no interaction between nitrogen and variety

Parallel lines mean the difference between varieties is the same at every dose. Their slope shows the nitrogen effect and their separation the variety effect.

Further reading: Tukey, Exploratory Data Analysis; Cleveland, Visualizing Data; Wickham, Tidy Data; Tufte, The Visual Display of Quantitative Information

5 · Graphics for designed experiments: interaction plots and residual plots · medium

Residuals from a field trial are mapped on the plot layout, and positive residuals cluster along one edge of the field. What does this show?

  1. Treatment effects that were estimated correctly
  2. A random pattern requiring no action
  3. An error in calculating the treatment means
  4. A spatial trend that blocking did not remove
Answer and working

D. A spatial trend that blocking did not remove

Residuals should look like random noise on the field map. Patches indicate spatial variation, which spatial analysis (row and column terms or correlated errors) can model, and which better blocking can avoid next time.

Further reading: Tukey, Exploratory Data Analysis; Cleveland, Visualizing Data; Wickham, Tidy Data; Tufte, The Visual Display of Quantitative Information

6 · Transformations to symmetry and constant variance · easy

Germination percentages in a trial range from 5% to 98%. Which transformation is traditional before ANOVA?

  1. Square root (with 0.5 added)
  2. Logarithm
  3. Angular (arcsine square root)
  4. Square
Answer and working

C. Angular (arcsine square root)

Binomial proportions have variance p(1 − p)/n, small near 0 and 100%; arcsin √p equalises it. It matters most when proportions span a wide range, as here.

Further reading: Tukey, Exploratory Data Analysis; Cleveland, Visualizing Data; Wickham, Tidy Data; Tufte, The Visual Display of Quantitative Information

7 · Transformations to symmetry and constant variance · hard

Bacterial counts 2, 8 and 32 (thousands per gram) are analysed on the log scale. The mean of the logs is back-transformed. What value results?

  1. 8
  2. 14
  3. 10
  4. 16
Answer and working

A. 8

Back-transforming the mean log gives the geometric mean: (2 × 8 × 32)^(1/3) = 512^(1/3) = 8. The arithmetic mean, 14, is larger, as it always is for unequal positive values.

Further reading: Tukey, Exploratory Data Analysis; Cleveland, Visualizing Data; Wickham, Tidy Data; Tufte, The Visual Display of Quantitative Information

8 · Tables for reports and publications · medium

What is the main drawback of mean-separation letters (means sharing a letter do not differ significantly)?

  1. They hide effect sizes and depend on the procedure
  2. They show only the largest and smallest means
  3. They show only the largest and the smallest of the treatment means
  4. They can be computed only for Latin square and lattice designs
Answer and working

A. They hide effect sizes and depend on the procedure

Letters compress many pairwise tests, but readers cannot see how large the differences are, and changing from LSD to Tukey's test changes the letters. The procedure and level must be stated.

Further reading: Tukey, Exploratory Data Analysis; Cleveland, Visualizing Data; Wickham, Tidy Data; Tufte, The Visual Display of Quantitative Information

9 · Tables for reports and publications · hard

Data from a log-scale analysis are reported in a table. Which presentation is correct?

  1. Log-scale means only, with no back-transformation
  2. Arithmetic means of the raw data alongside the log-scale LSD
  3. Back-transformed geometric means with asymmetric limits
  4. Log-scale means only, with no back-transformation of any kind
Answer and working

C. Back-transformed geometric means with asymmetric limits

Back-transforming log means gives geometric means; limits back-transform to asymmetric intervals. A log-scale SE cannot be exponentiated into an original-scale SE, and mixing raw means with log-scale LSDs is inconsistent.

Further reading: Tukey, Exploratory Data Analysis; Cleveland, Visualizing Data; Wickham, Tidy Data; Tufte, The Visual Display of Quantitative Information

10 · Tables for reports and publications · medium

Which practice makes the tables in an analysis report reproducible?

  1. Typing the final numbers into the word processor from printed output
  2. Generating every table by script from the cleaned data, with code and software versions archived
  3. Copying numbers from the previous year's report and updating changed cells
  4. Rounding all numbers to whole units so that copying errors are less visible
Answer and working

B. Generating every table by script from the cleaned data, with code and software versions archived

Scripted tables update automatically when data are corrected and can be regenerated by reviewers; hand-typed numbers introduce errors that are hard to trace.

Further reading: Tukey, Exploratory Data Analysis; Cleveland, Visualizing Data; Wickham, Tidy Data; Tufte, The Visual Display of Quantitative Information

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Exploratory Data Analysis & Statistical GraphicsThe full study manual, free ICAR AICE-JRF/SRFFormat, sections and how it has changed

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Exploratory Data Analysis & Statistical Graphics for other exams

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