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Fusarium wilt of cotton

Fusarium oxysporum f. sp. vasinfectum Fusarium oxysporum f. sp. vasinfectum (G.F. Atk.) W.C. Snyder & H.N. Hansen · formerly or also: Fov

Fusarium wilt of cotton is caused by a soil fungus that invades the roots and blocks the water-conducting vessels. Seedlings may die, and older plants yellow, wilt, lose leaves and become stunted, with brown streaks inside the stem. In many regions the disease is worst together with root-knot nematodes, but newer strains such as race 4 in the United States and the Australian strain cause severe disease on their own. The fungus survives in soil for many years and can be carried on seed.

Type
Fungal disease · Fungus (ascomycete, soil-borne)
Classification
Fungi › Sordariomycetes › Hypocreales › Nectriaceae
Main crops
Cotton
Found in
Asia, Africa and the Middle East, Americas, Oceania
Last reviewed
2026-10-20

What causes Fusarium wilt of cotton?

Fusarium wilt of cotton is caused by Fusarium oxysporum f. sp. vasinfectum Fusarium oxysporum f. sp. vasinfectum (G.F. Atk.) W.C. Snyder & H.N. Hansen, a fungus (ascomycete, soil-borne) (order Hypocreales, family Nectriaceae).

Older or alternative scientific names: Fov.

Where it occurs

Found in cotton-growing regions worldwide, including Asia, Africa, the Americas and Australia. Race 4 was reported in California in the early 2000s and in Texas and New Mexico from 2017, and a distinct strain was found in Australia in 1993.

RegionStatus
AsiaWidespread; major in China, India and Central Asia
Africa and the Middle EastPresent; historically important in Egypt and Sudan
AmericasWidespread; race 4 spreading in the south-western US
OceaniaAustralian strain present since 1993

Symptoms and identification of Fusarium wilt of cotton

The organism

A soil fungus that forms long-lived thick-walled spores (chlamydospores) in dead tissue. Races and genetic groups differ in aggressiveness and in whether they need root-knot nematodes to cause disease. Identification of the race requires laboratory tests. Because many races cause disease only with root-knot nematodes, a nematode test is part of the diagnosis.

Signs in the crop, stage by stage

Crop stageWhat you see
SeedlingsYellowing and wilting of seed leaves and death of seedlings, often in patches (especially with race 4).
Older plantsLeaf margins yellow, then brown; wilting, leaf drop and stunting, often worse on one side of the plant.
Inside the stemContinuous dark brown streaks in the water-conducting tissue of the lower stem and roots.

Disease cycle of Fusarium wilt of cotton

1Chlamydospores insoil2Root infection3Vascularcolonisation4New spores in deadtissueFusarium wilt ofcotton
Life cycle of Fusarium wilt of cotton — diagram drawn by Laisha from the stages below. Durations depend on temperature.

Chlamydospores in soil germinate near cotton roots and infect them, often through wounds made by root-knot nematodes. The fungus grows into the xylem and spreads upward. When infected plants die, new chlamydospores form in the tissue and return to the soil. The fungus is spread by infested soil on equipment, irrigation water, plant debris and seed.

StageDurationNotes
Chlamydospores in soilSurvive many yearsMain inoculum.
Root infectionFrom seedling stageAided by root-knot nematodes for many races.
Vascular colonisationWeeksWilting and stem browning.
New spores in dead tissueEnd of seasonBuilds up soil inoculum.

Temperature

Disease is favoured by warm soils (about 25-30 °C); cool early-season conditions can favour seedling infection by race 4.

Generations

One main cycle per crop; inoculum builds up with continuous cotton.

Conditions that favour it

Sandy soils with root-knot nematodes, continuous cotton, susceptible varieties (especially Pima cotton for race 4), potassium deficiency, and movement of infested soil, water and seed.

Economic threshold level (ETL)

There is no economic threshold; management is preventive, based on variety choice, clean seed and sanitation, and nematode management where nematodes are involved.

Thresholds are local. They depend on crop price, control cost, variety and natural-enemy activity, so use the figure your local extension service publishes where one exists.

Damage and yield loss from Fusarium wilt of cotton

Plant deaths and wilting cause patchy to severe yield losses; race 4 can kill large numbers of seedlings in susceptible varieties, and infested fields may become unsuitable for those varieties.

Monitoring

How to control Fusarium wilt of cotton (integrated management)

Control works best as a sequence: prevent, monitor, then act only when a threshold or a risk forecast says so, using the least disruptive option that works.

Cultural control

Biological control

Host resistance

Chemical control of Fusarium wilt of cotton — by mode-of-action group only

Laisha names chemical options only by their resistance-committee mode-of-action group (IRAC for insects, mites and nematodes, FRAC for fungi, oomycetes and bacteria, HRAC for weeds), never by active ingredient or product. What is registered differs by country and changes over time; the label and your local plant-protection authority decide what may be used, on which crop, at what rate and with what pre-harvest interval.

No fungicide treatment controls the wilt in the field; seed treatments protect seedlings only partly, and nematicides are used where root-knot nematodes increase disease. What is registered differs by country and changes over time; follow the label and your local plant-protection authority.

Resistance management

Look-alikes and how to tell them apart

Host range

Cotton (upland and Pima/Egyptian cotton) is the main host; some strains also infect a few other plants in tests.

What is still uncertain

Grow guides for its host crops

How to grow the crop well is the first line of defence. Laisha's free grow guides cover each crop from sowing to harvest:

Not sure this is what you are seeing?Ask Laisha: describe the symptoms or send a photo, and get a reasoned first read with what to check next — for your crop, your stage and your region.Ask Laisha

Sources

  1. Fusarium oxysporum f.sp. vasinfectum (Fusarium wilt) datasheet — CABI Compendium. https://doi.org/10.1079/cabicompendium.24715
  2. Fusarium oxysporum f. sp. vasinfectum (FUSAVA) — EPPO Global Database. https://gd.eppo.int/taxon/FUSAVA
  3. Fusarium wilt: Cotton Pest Management Guidelines — UC IPM. https://ipm.ucanr.edu/agriculture/cotton/fusarium-wilt
  4. Status update on Fusarium wilt of cotton race 4 in Texas and New Mexico — Plant Health Exchange (APS). https://doi.org/10.1094/grow-cot-12-18-159

Written by Laisha from the sources above, in its own words. This page is general reference, not a prescription: confirm identification locally and follow the label and your plant-protection authority.

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