LaishaLaisha AI Operating System for Agriculture Ask Laisha

Brown spot of rice

Bipolaris oryzae (Breda de Haan) Shoemaker, 1959 (sexual stage Cochliobolus miyabeanus) · formerly or also: Cochliobolus miyabeanus, Helminthosporium oryzae, Drechslera oryzae

Brown spot covers rice leaves and grains with oval brown spots with grey centres. It is a disease of poor and stressed rice: it is worst on nutrient-poor soils, in drought-prone rainfed rice and where potassium, silicon or nitrogen are short. Historically it contributed to the Bengal famine of 1943, and it remains a common cause of yield and grain-quality loss in rainfed rice. Because it reflects crop stress, the best control is good crop nutrition and water management rather than repeated spraying.

Rice leaf with brown spot lesions
Rice leaf with brown spot lesions. Photo: Donald Groth, Louisiana State University AgCenter, CC BY 3.0 US, via Wikimedia Commons.
Type
Fungal disease · Fungus (ascomycete)
Classification
Fungi › Dothideomycetes › Pleosporales › Pleosporaceae
Main crops
Rice
Found in
South Asia, Southeast Asia, Africa, Americas and other regions
Chemical groups
FRAC 3, FRAC M03, FRAC 11 (mode-of-action groups, not products)
Last reviewed
2026-10-20

What causes brown spot of rice?

Brown spot of rice is caused by Bipolaris oryzae (Breda de Haan) Shoemaker, 1959 (sexual stage Cochliobolus miyabeanus), a fungus (ascomycete) (order Pleosporales, family Pleosporaceae).

Older or alternative scientific names: Cochliobolus miyabeanus, Helminthosporium oryzae, Drechslera oryzae.

Where it occurs

Present in all rice-growing regions, and most damaging in rainfed lowland and upland rice on poor soils in South and Southeast Asia and Africa.

RegionStatus
South AsiaWidespread; historic epidemics
Southeast AsiaWidespread in rainfed rice
AfricaWidespread
Americas and other regionsPresent

Symptoms and identification of brown spot of rice

Conidia of Bipolaris oryzae under the microscope
Conidia of Bipolaris oryzae under the microscope. Photo: Jie-Hao Ou, CC BY 4.0, via Wikimedia Commons.

The organism

The fungus produces long, dark, curved conidia with several cross-walls on dark conidiophores in lesions. It is seed-borne and survives on infected seed, straw and grass hosts.

Signs in the crop, stage by stage

Crop stageWhat you see
SeedlingSmall brown lesions on coleoptiles and leaves; seedling blight from infected seed.
Tillering to bootingOval, eye-shaped brown spots with grey or whitish centres and often a yellow halo, scattered evenly over the leaves; many spots cause leaves to dry.
Heading to maturityDark brown to black spots on glumes and grain ('grain discoloration'); light, chalky or broken grain.

Disease cycle of brown spot of rice

1Survival2Infection3Lesions andsporulation4Grain infectionBrown spot of rice
Life cycle of Brown spot of rice — diagram drawn by Laisha from the stages below. Durations depend on temperature.

Infected seed and straw carry the fungus into the next crop. Airborne conidia from lesions infect leaves and grains when they are wet, and many cycles occur during the season. Stressed plants are much more susceptible. Seed-borne infection leads to seedling blight and early lesions in the nursery; the disease then builds up through the season, often becoming conspicuous after flowering when plants are under nutrient stress.

StageDurationNotes
SurvivalBetween seasonsSeed, straw, grass hosts.
InfectionAbout 8-24 hours of leaf wetnessFavoured at 25-30 °C.
Lesions and sporulationAbout 1 weekRepeated cycles.
Grain infectionHeading to maturitySeed carries the fungus forward.

Temperature

Infection is favoured by about 25-30 °C with long leaf wetness or humidity above about 90%.

Generations

Several cycles per crop.

Conditions that favour it

Nutrient-poor soils (low potassium, silicon, nitrogen or manganese), drought stress in rainfed rice, infected seed, and long dew periods. Soils that are sandy, acidic, leached or low in organic matter are typical settings, as are crops grown with little or no fertiliser.

Economic threshold level (ETL)

There is no widely used numeric economic threshold; correcting soil fertility and using clean seed is the main approach, with fungicides considered for seed crops or severe outbreaks.

Thresholds are local. They depend on crop price, control cost, variety and natural-enemy activity, so use the figure your local extension service publishes where one exists.

Damage and yield loss from brown spot of rice

Yield losses commonly range from a few per cent to 30-40% in rainfed rice on poor soils, with quality losses from discoloured, light grain; epidemics in 1942-43 contributed to the Bengal famine. Seed from infected crops germinates poorly and carries the fungus into nurseries, so quality losses continue into the next season.

Monitoring

How to control brown spot of rice (integrated management)

Control works best as a sequence: prevent, monitor, then act only when a threshold or a risk forecast says so, using the least disruptive option that works.

Cultural control

Mechanical and physical control

Biological control

Host resistance

Chemical control of brown spot of rice — by mode-of-action group only

Laisha names chemical options only by their resistance-committee mode-of-action group (IRAC for insects, mites and nematodes, FRAC for fungi, oomycetes and bacteria, HRAC for weeds), never by active ingredient or product. What is registered differs by country and changes over time; the label and your local plant-protection authority decide what may be used, on which crop, at what rate and with what pre-harvest interval.

Seed treatment reduces seed-borne infection; foliar sprays are considered for seed crops or severe outbreaks. What is registered differs by country and changes over time; follow the label and your local plant-protection authority.

SchemeGroupMode of actionNotes
FRAC3Demethylation inhibitors (DMI)Foliar and seed uses.
FRACM03Dithiocarbamates and relatives (multi-site)Protectant; seed treatment.
FRAC11Quinone outside inhibitors (QoI)In mixtures.

Resistance management

Look-alikes and how to tell them apart

Host range

Rice is the main host; wild rice and several grasses (for example Leersia, Digitaria and Echinochloa species) are also infected.

What is still uncertain

Grow guides for its host crops

How to grow the crop well is the first line of defence. Laisha's free grow guides cover each crop from sowing to harvest:

Not sure this is what you are seeing?Ask Laisha: describe the symptoms or send a photo, and get a reasoned first read with what to check next — for your crop, your stage and your region.Ask Laisha

Sources

  1. Bipolaris oryzae (brown leaf spot of rice) datasheet — CABI Compendium. https://doi.org/10.1079/cabicompendium.14691
  2. Bipolaris oryzae (COCHMI) — EPPO Global Database. https://gd.eppo.int/taxon/COCHMI
  3. Brown spot fact sheet — IRRI Rice Knowledge Bank. http://www.knowledgebank.irri.org/training/fact-sheets/pest-management/diseases/item/brown-spot
  4. Aerobiological dynamics of Bipolaris oryzae in the rice agroecosystem and its impact on brown spot — Crop Research (Gaurav Society of Agricultural Research). https://doi.org/10.31830/2454-1761.2022.892

Written by Laisha from the sources above, in its own words. This page is general reference, not a prescription: confirm identification locally and follow the label and your plant-protection authority.