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Septoria tritici blotch of wheat

Zymoseptoria tritici (Desm.) Quaedvl. & Crous, 2011 · formerly or also: Mycosphaerella graminicola, Septoria tritici

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Septoria tritici blotch is the most important leaf disease of wheat in Europe and a major one in other wet temperate regions. Rain splashes its spores up the plant, and long brown blotches peppered with tiny black dots destroy the upper leaves during grain filling. The fungus has evolved resistance to several fungicide groups in turn, which makes resistant varieties and careful programmes essential.

Wheat leaves with Septoria tritici blotch
Wheat leaves with Septoria tritici blotch. Photo: Maccheek, Public domain, via Wikimedia Commons.
Type
Fungal disease · Fungus (ascomycete)
Classification
Fungi › Dothideomycetes › Mycosphaerellales (formerly Capnodiales) › Mycosphaerellaceae
Main crops
Wheat, Triticale
Found in
North-western Europe, Mediterranean, Middle East and North Africa, South America, East Africa, North America and Oceania
Chemical groups
FRAC 3, FRAC 7, FRAC M04, FRAC M05, FRAC 21 (mode-of-action groups, not products)
Last reviewed
2026-10-19

What causes Septoria tritici blotch of wheat?

Septoria tritici blotch of wheat is caused by Zymoseptoria tritici (Desm.) Quaedvl. & Crous, 2011, a fungus (ascomycete) (order Mycosphaerellales (formerly Capnodiales), family Mycosphaerellaceae).

Older or alternative scientific names: Mycosphaerella graminicola, Septoria tritici.

Where it occurs

Present in almost all wheat-growing regions, and most damaging where springs and early summers are mild and wet: north-western Europe, the Mediterranean, the Southern Cone of South America, East African highlands, the Middle East and North Africa, North America and southern Australia.

RegionStatus
North-western EuropeWidespread; the main foliar disease of wheat
Mediterranean, Middle East and North AfricaWidespread in rain-fed wheat
South AmericaWidespread in the Southern Cone
East AfricaImportant in highland wheat
North America and OceaniaPresent; important in wet seasons

Symptoms and identification of Septoria tritici blotch of wheat

Septoria blotch lesion on a wheat leaf
Septoria blotch lesion on a wheat leaf. Photo: Kövics György, CC BY 4.0, via Wikimedia Commons.

The organism

Lesions contain small, dark brown to black, flask-shaped fruiting bodies (pycnidia) embedded in the leaf, visible as black dots with a hand lens; in wet conditions they exude creamy tendrils of spores. The sexual stage forms on older lesions and stubble and releases airborne ascospores.

Signs in the crop, stage by stage

Crop stageWhat you see
Autumn and winter (seedling to tillering)Small yellow flecks and brown blotches on the oldest leaves.
Stem elongationIrregular, elongated tan-to-brown blotches, often limited by veins, with black pycnidia; lower leaves die.
Flag leaf to grain fillingLesions move up to the top three leaves after rain; leaves die early; smaller, shrivelled grains.

Disease cycle of Septoria tritici blotch of wheat

1Ascospores fromstubble infectyoung crops2Symptomless(latent) phase3Lesions withpycnidia4Sexual stage onold lesions andstubbleSeptoria triticiblotch of wheat
Life cycle of Septoria tritici blotch of wheat — diagram drawn by Laisha from the stages below. Durations depend on temperature.

Airborne ascospores from wheat stubble start infection in newly sown crops in autumn. Thereafter, asexual spores from pycnidia are splashed upward by rain from leaf to leaf. The fungus has a long symptomless phase inside the leaf, so infections that happened during rain at stem elongation only become visible two to four weeks later - which is why protection is preventive.

StageDurationNotes
Ascospores from stubble infect young cropsAutumn to springAirborne over long distances.
Symptomless (latent) phaseAbout 14-28 daysShorter in warm weather.
Lesions with pycnidiaThrough the seasonPycnidiospores spread by rain splash.
Sexual stage on old lesions and stubbleLate season and between cropsGenerates new genetic diversity including fungicide resistance.

Temperature

Infection needs long leaf wetness (about 1-2 days) and temperatures of about 15-25 °C; the long latent period shortens as temperature rises. Frequent rain at stem elongation and flag-leaf emergence is the strongest predictor of severe disease.

Generations

Several splash-dispersed cycles in each wheat season.

Conditions that favour it

Mild, wet weather in spring and early summer, early sowing (more autumn infection), susceptible varieties, wheat after wheat with stubble retained, and dense canopies.

Economic threshold level (ETL)

There is no simple numeric economic threshold; decisions are based on variety resistance rating, rainfall in the weeks before key growth stages, and disease on the lower leaves. In temperate Europe, programmes protect the final leaves at stem elongation (around growth stage 32) and flag-leaf emergence (around growth stage 39), and rainfall-based risk models help decide whether each treatment is needed.

Thresholds are local. They depend on crop price, control cost, variety and natural-enemy activity, so use the figure your local extension service publishes where one exists.

Damage and yield loss from Septoria tritici blotch of wheat

Yield losses of 5-10% are common in average seasons and 30-50% in susceptible varieties in wet seasons. In Europe the disease is the main reason for fungicide use on wheat.

Monitoring

How to control Septoria tritici blotch of wheat (integrated management)

Control works best as a sequence: prevent, monitor, then act only when a threshold or a risk forecast says so, using the least disruptive option that works.

Cultural control

Biological control

Host resistance

Chemical control of Septoria tritici blotch of wheat — by mode-of-action group only

Laisha names chemical options only by their resistance-committee mode-of-action group (IRAC for insects, mites and nematodes, FRAC for fungi, oomycetes and bacteria, HRAC for weeds), never by active ingredient or product. What is registered differs by country and changes over time; the label and your local plant-protection authority decide what may be used, on which crop, at what rate and with what pre-harvest interval.

Programmes are preventive and timed to protect the top leaves; mixtures with multi-site protectants reduce resistance risk. What is registered differs by country and changes over time; follow the label and your local plant-protection authority.

SchemeGroupMode of actionNotes
FRAC3Demethylation inhibitors (DMI)Reduced sensitivity widespread in Europe; still used in mixtures.
FRAC7Succinate dehydrogenase inhibitors (SDHI)Key partner; resistance emerging.
FRACM04Phthalimides (multi-site contact)Protectant partner where registered.
FRACM05Chloronitriles (multi-site contact)Protectant; withdrawn in some regions.
FRAC21Quinone inside inhibitors (QiI)Newer group for this disease.

Resistance management

Look-alikes and how to tell them apart

Host range

Bread and durum wheat, triticale and some wild grasses. It does not cause significant disease on barley or oats.

What is still uncertain

Grow guides for its host crops

How to grow the crop well is the first line of defence. Laisha's free grow guides cover each crop from sowing to harvest:

Not sure this is what you are seeing?Ask Laisha: describe the symptoms or send a photo, and get a reasoned first read with what to check next — for your crop, your stage and your region.Ask Laisha

Sources

  1. Zymoseptoria tritici datasheet — CABI Compendium. https://doi.org/10.1079/cabicompendium.119438
  2. Zymoseptoria tritici (SEPTTR) — EPPO Global Database. https://gd.eppo.int/taxon/SEPTTR
  3. Septoria tritici in winter wheat — AHDB. https://ahdb.org.uk/knowledge-library/septoria-tritici-in-winter-wheat
  4. FRAC SDHI and DMI working group recommendations — FRAC. https://www.frac.info/

Written by Laisha from the sources above, in its own words. This page is general reference, not a prescription: confirm identification locally and follow the label and your plant-protection authority.