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Septoria leaf spot of tomato

Septoria lycopersici Septoria lycopersici Speg., 1881

Septoria leaf spot covers tomato leaves with many small round spots that have grey centres, dark edges and tiny black dots inside. It starts on the lowest leaves after the first fruit sets and moves upward in warm, wet weather, stripping plants of their leaves. The fruit is rarely attacked, but defoliated plants give smaller fruit that is often scalded by the sun.

Tomato leaves with Septoria leaf spot: many small spots and yellowing leaflets
Tomato leaves with Septoria leaf spot: many small spots and yellowing leaflets. Photo: MerielGJones, CC BY-SA 4.0, via Wikimedia Commons.
Type
Fungal disease · Fungus (ascomycete)
Classification
Fungi › Dothideomycetes › Mycosphaerellales › Mycosphaerellaceae
Main crops
Tomato, Eggplant, Potato
Found in
Americas, Europe, Asia and Africa, Oceania
Chemical groups
FRAC M05, FRAC M03, FRAC 11, FRAC 3 (mode-of-action groups, not products)
Last reviewed
2026-10-20

What causes Septoria leaf spot of tomato?

Septoria leaf spot of tomato is caused by Septoria lycopersici Septoria lycopersici Speg., 1881, a fungus (ascomycete) (order Mycosphaerellales, family Mycosphaerellaceae).

Where it occurs

Found wherever tomatoes are grown in humid, rainy conditions; one of the most common tomato leaf diseases in field and garden crops.

RegionStatus
AmericasWidespread, especially in humid regions
EuropePresent; more common in wet summers
Asia and AfricaWidespread in rainy seasons and highlands
OceaniaPresent

Symptoms and identification of Septoria leaf spot of tomato

The organism

A fungus that forms flask-shaped fruiting bodies (pycnidia), seen as black dots in the centre of spots; in wet weather they ooze long, thread-like spores that are splashed to other leaves. Spores spread only short distances by splash, so the disease usually starts in patches near infested debris or weeds and moves along rows.

Signs in the crop, stage by stage

Crop stageWhat you see
Lower leavesSmall, water-soaked spots that become round, 1.5-6 mm across, with grey or tan centres and dark brown margins; tiny black pycnidia in the centres.
Spread upwardMany spots per leaf; leaves turn yellow, then brown, and drop from the bottom of the plant upward.
Stems, calyx and fruitSpots may appear on stems, leaf stalks and calyx; fruit spots are rare; defoliated plants expose fruit to sunscald.

Disease cycle of Septoria leaf spot of tomato

1Survival2Infection3Spot developmentand pycnidia4Repeated splashdispersalSeptoria leaf spotof tomato
Life cycle of Septoria leaf spot of tomato — diagram drawn by Laisha from the stages below. Durations depend on temperature.

The fungus survives on infected tomato debris and on solanaceous weeds, and can be carried on seed. In wet weather spores ooze from pycnidia and are splashed by rain and overhead irrigation, by hands and tools, and by insects. New spots appear within about a week and produce spores in turn, so the disease repeats many times in a season.

StageDurationNotes
SurvivalOn debris and weeds between seasonsDebris in or on soil.
InfectionAfter leaves stay wet for many hoursThrough stomata.
Spot development and pycnidiaAbout 5-10 daysSpores ooze in wet weather.
Repeated splash dispersalThrough the seasonMoves up the plant.

Temperature

Most severe at about 20-25 °C with long periods of leaf wetness, rain and high humidity.

Generations

Many cycles in warm, wet seasons.

Conditions that favour it

Frequent rain or overhead irrigation, long leaf wetness, dense unstaked plants with leaves touching the soil, tomato debris left from previous crops, and nightshade weeds nearby.

Economic threshold level (ETL)

There is no numeric economic threshold; growers in humid regions start protection when the first spots appear or follow regional disease forecasts.

Thresholds are local. They depend on crop price, control cost, variety and natural-enemy activity, so use the figure your local extension service publishes where one exists.

Damage and yield loss from Septoria leaf spot of tomato

Heavy defoliation reduces fruit size, yield and quality and exposes fruit to sunscald; field studies have measured yield losses of a third or more when the disease was not controlled. Losses are greatest when defoliation begins before or during fruit set.

Monitoring

How to control Septoria leaf spot of tomato (integrated management)

Control works best as a sequence: prevent, monitor, then act only when a threshold or a risk forecast says so, using the least disruptive option that works.

Cultural control

Biological control

Host resistance

Chemical control of Septoria leaf spot of tomato — by mode-of-action group only

Laisha names chemical options only by their resistance-committee mode-of-action group (IRAC for insects, mites and nematodes, FRAC for fungi, oomycetes and bacteria, HRAC for weeds), never by active ingredient or product. What is registered differs by country and changes over time; the label and your local plant-protection authority decide what may be used, on which crop, at what rate and with what pre-harvest interval.

Protectant fungicides applied before or at the first spots and repeated during wet weather keep the disease in check. What is registered differs by country and changes over time; follow the label and your local plant-protection authority.

SchemeGroupMode of actionNotes
FRACM05Chloronitriles (multi-site)Protectant.
FRACM03Dithiocarbamates and relatives (multi-site)Protectant.
FRAC11Quinone outside inhibitors (QoI)High resistance risk; limit applications.
FRAC3Demethylation inhibitors (DMI)Medium resistance risk.

Resistance management

Look-alikes and how to tell them apart

Host range

Mainly tomato; also other solanaceous plants such as eggplant, potato and weeds including nightshades, jimsonweed and horsenettle.

What is still uncertain

Grow guides for its host crops

How to grow the crop well is the first line of defence. Laisha's free grow guides cover each crop from sowing to harvest:

Not sure this is what you are seeing?Ask Laisha: describe the symptoms or send a photo, and get a reasoned first read with what to check next — for your crop, your stage and your region.Ask Laisha

Sources

  1. Septoria lycopersici (leaf spot of tomato) datasheet — CABI Compendium. https://doi.org/10.1079/cabicompendium.49676
  2. Septoria lycopersici (SEPTLY) — EPPO Global Database. https://gd.eppo.int/taxon/SEPTLY
  3. Septoria leaf spot of tomato — NC State Extension. https://content.ces.ncsu.edu/septoria-leaf-spot-of-tomato
  4. Reduction in tomato yield due to Septoria leaf spot — Plant Disease (APS). https://doi.org/10.1094/pd-76-0208

Written by Laisha from the sources above, in its own words. This page is general reference, not a prescription: confirm identification locally and follow the label and your plant-protection authority.

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