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Blackleg of canola (Phoma stem canker)

Leptosphaeria maculans Leptosphaeria maculans (Desm.) Ces. & De Not., 1863 (asexual stage Plenodomus lingam) · formerly or also: Plenodomus lingam, Phoma lingam

Blackleg, or Phoma stem canker, is the most important disease of oilseed rape (canola) in Europe, Australia and Canada. The fungus first causes pale leaf spots dotted with tiny black fruiting bodies, then grows inside the leaf stalk to the stem base, where it forms a dark canker that girdles the stem. Plants lodge or ripen early, and yields fall. A related, less damaging species, Leptosphaeria biglobosa, causes similar symptoms and is the main species in China.

Canola leaf with pale blackleg lesions dotted with tiny black fruiting bodies
Canola leaf with pale blackleg lesions dotted with tiny black fruiting bodies. Photo: EleanorBrock (Wikimedia user), CC BY 4.0, via Wikimedia Commons.
Type
Fungal disease · Fungus (ascomycete)
Classification
Fungi › Dothideomycetes › Pleosporales › Leptosphaeriaceae
Main crops
Rapeseed, Mustard, Cabbage, Cauliflower & broccoli, Kale, Turnip
Found in
Europe, Oceania, North America, Asia
Chemical groups
FRAC 3, FRAC 7, FRAC 11 (mode-of-action groups, not products)
Last reviewed
2026-10-20

What causes blackleg of canola?

Blackleg of canola is caused by Leptosphaeria maculans Leptosphaeria maculans (Desm.) Ces. & De Not., 1863 (asexual stage Plenodomus lingam), a fungus (ascomycete) (order Pleosporales, family Leptosphaeriaceae).

Older or alternative scientific names: Plenodomus lingam, Phoma lingam.

Where it occurs

Found wherever oilseed rape and other brassicas are grown, with the aggressive L. maculans dominant in Europe, Australia and North America, and L. biglobosa more common in parts of Asia.

RegionStatus
EuropeWidespread; major in oilseed rape
OceaniaWidespread; major in Australian canola
North AmericaWidespread in Canadian and US canola
AsiaMainly L. biglobosa; L. maculans is regulated in some countries

Symptoms and identification of blackleg of canola

The organism

A fungus that forms pycnidia (asexual fruiting bodies) in leaf lesions and stem cankers, and pseudothecia (sexual fruiting bodies) on crop stubble. Ascospores from stubble are blown long distances and start new infections. Populations carry different avirulence genes, which determine which resistance genes in the crop are effective. Seed-borne infection is one route by which the aggressive species has reached new regions, so seed is regulated in some countries.

Signs in the crop, stage by stage

Crop stageWhat you see
Cotyledons and leavesRound pale grey to off-white lesions with many tiny black pycnidia; lesions of L. biglobosa are smaller and darker with fewer pycnidia.
Stem base (crown)Dark brown to black canker at the stem base, often with a purple margin; stem girdled and cracked; inside the stem, dark discoloured tissue.
Late seasonLodging and premature ripening; upper stem lesions and pod lesions in some seasons.

Disease cycle of blackleg of canola

1Survival onstubble2Leaf infection3Symptomless growthto the stem4Stem cankerBlackleg of canola(Phoma stem canker)
Life cycle of Blackleg of canola (Phoma stem canker) — diagram drawn by Laisha from the stages below. Durations depend on temperature.

The fungus survives on infected stubble for several years. Ascospores released from stubble infect cotyledons and young leaves. The fungus then grows without symptoms down the leaf stalk into the stem and forms a canker at the stem base. It also survives and spreads in infected seed.

StageDurationNotes
Survival on stubbleTwo to four yearsPseudothecia release ascospores.
Leaf infectionSeedling to rosette stageAfter rain.
Symptomless growth to the stemWeeks to monthsDown the leaf stalk.
Stem cankerLate seasonCauses yield loss.

Temperature

Ascospore release and leaf infection follow rain; warmer temperatures speed the growth from leaf to stem.

Generations

One main cycle per crop, with spores released over many weeks.

Conditions that favour it

Short rotations with canola, nearby stubble from the previous season, early infection of seedlings after rain, susceptible varieties or varieties whose resistance genes have been overcome.

Economic threshold level (ETL)

There is no numeric economic threshold; management decisions use variety resistance ratings, rotation history, distance from last year's stubble and regional risk forecasts.

Thresholds are local. They depend on crop price, control cost, variety and natural-enemy activity, so use the figure your local extension service publishes where one exists.

Damage and yield loss from blackleg of canola

Stem cankers reduce yield and cause lodging; severe epidemics have caused large losses in Australia, Europe and Canada, especially when widely grown resistance genes were overcome. The main yield loss comes from stem cankers that restrict water flow during pod filling.

Monitoring

How to control blackleg of canola (integrated management)

Control works best as a sequence: prevent, monitor, then act only when a threshold or a risk forecast says so, using the least disruptive option that works.

Cultural control

Biological control

Host resistance

Chemical control of blackleg of canola — by mode-of-action group only

Laisha names chemical options only by their resistance-committee mode-of-action group (IRAC for insects, mites and nematodes, FRAC for fungi, oomycetes and bacteria, HRAC for weeds), never by active ingredient or product. What is registered differs by country and changes over time; the label and your local plant-protection authority decide what may be used, on which crop, at what rate and with what pre-harvest interval.

Fungicide seed treatments, in-furrow treatments and early foliar sprays reduce leaf infection in high-risk situations. What is registered differs by country and changes over time; follow the label and your local plant-protection authority.

SchemeGroupMode of actionNotes
FRAC3Demethylation inhibitors (DMI)Seed, in-furrow and foliar uses.
FRAC7Succinate dehydrogenase inhibitors (SDHI)Foliar, often in mixtures.
FRAC11Quinone outside inhibitors (QoI)Use in mixtures.

Resistance management

Look-alikes and how to tell them apart

Host range

Oilseed rape and canola (Brassica napus and B. rapa), mustards, cabbage, cauliflower, broccoli, kale, turnip and other crucifers.

What is still uncertain

Grow guides for its host crops

How to grow the crop well is the first line of defence. Laisha's free grow guides cover each crop from sowing to harvest:

Not sure this is what you are seeing?Ask Laisha: describe the symptoms or send a photo, and get a reasoned first read with what to check next — for your crop, your stage and your region.Ask Laisha

Sources

  1. Leptosphaeria maculans (stem canker) datasheet — CABI Compendium. https://doi.org/10.1079/cabicompendium.31468
  2. Plenodomus lingam (LEPTMA) — EPPO Global Database. https://gd.eppo.int/taxon/LEPTMA
  3. Usefulness of winter canola race-specific resistance genes against blackleg (Leptosphaeria maculans) — Crop and Pasture Science (CSIRO Publishing). https://doi.org/10.1071/cp10187
  4. Detection of Leptosphaeria maculans and Leptosphaeria biglobosa causing blackleg disease in canola — Plants (MDPI). https://doi.org/10.3390/plants5010012
  5. Black leg: Cole Crops Pest Management Guidelines — UC IPM. https://ipm.ucanr.edu/agriculture/cole-crops/black-leg

Written by Laisha from the sources above, in its own words. This page is general reference, not a prescription: confirm identification locally and follow the label and your plant-protection authority.

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